species:   Fugra
pid:       PID1000
parent:    FgmilR-7dps-60
paralog:   
locus:     NC_026476.1:4500737-4500880
matures:   ['UGAGGUCCGGUCCUGUAGAUGGU', 'CGGCGACAGGGCAUGGACCUCAGU']
srr:       SRR6516242
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram NC_026476.1:4500737-4500880

2 out of bounds
13 alignments
6 proper strand
5 stranded perfect matches

                   **************************                                                          *************************                
GUCUGGAGUCUAGAGUCUGGCCGGCGACAGGGCAUGGACCUCAGUCAAGGGUAAGAUGACGAACUUGUGCUCAGUCAAGGUUCUGUCCUUUGUCUUGCCCUGAAGUGAGGUCCGGUCCUGUAGAUGGUGUCUGAGAUGGCCUGC
....((.((((..((....((((...(((((((.(((((((((.(..(((((((((((((((((((...........)))))).)))....))))))))))..).))))))))))))))))...))))..)).))))..))...
---------------------------------------------------------------------------------------------------------UGAGGUCCGGUCCUGUAGAUGGU---------------- l=23 a=4 c
---------------------CGGCGACAGGGCAUGGACCUCAGU--------------------------------------------------------------------------------------------------- l=24 a=0 c*
---------------------------------------------------------------------------------------------------------UGAGGUCCGGUCCUGUAGAUGGU---------------- l=23 a=4 ma
---------------------CGGCGACAGGGCAUGGACCUCAGU--------------------------------------------------------------------------------------------------- l=24 a=0 ma*

---------------------------------------------------------------------------------------------------------UGAGGUCCGGUCCUGUAGAUGGU---------------- l=23 a=4 (c,ma)
---------------------------------------------------------------------------------------------------------gGAGGUCCGGUCCUGUAGAUGGUG--------------- l=24 a=1 
---------------------------------------------------------------------------------------------------------UGAGGUCCGGUCCUGUAGAUGGUGU-------------- l=25 a=1 

mb-01011
ax-1011011
ku-01
ss-101110011100
fn-101
